Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1989585..1989730 | Replicon | chromosome |
| Accession | NZ_CP098355 | ||
| Organism | Klebsiella pneumoniae strain 13001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1989621..1989723 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1989585..1989730 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NB672_RS09835 (NB672_09835) | 1984715..1986775 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NB672_RS09840 (NB672_09840) | 1986779..1987438 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NB672_RS09845 (NB672_09845) | 1987517..1987747 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NB672_RS09850 (NB672_09850) | 1987860..1988234 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NB672_RS09855 (NB672_09855) | 1988238..1989107 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NB672_RS09860 (NB672_09860) | 1989124..1989462 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1989585..1989730 | - | 146 | - | - | Antitoxin |
| - | 1989621..1989723 | + | 103 | - | - | Toxin |
| NB672_RS09865 (NB672_09865) | 1990098..1990241 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NB672_RS09870 (NB672_09870) | 1990346..1991314 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NB672_RS09875 (NB672_09875) | 1991471..1992124 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| NB672_RS09880 (NB672_09880) | 1992121..1992312 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NB672_RS09885 (NB672_09885) | 1992410..1992649 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NB672_RS09890 (NB672_09890) | 1992765..1994198 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T247569 NZ_CP098355:1989621-1989723 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT247569 NZ_CP098355:c1989730-1989585 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
