Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2075641..2075786 | Replicon | chromosome |
| Accession | NZ_CP098352 | ||
| Organism | Klebsiella pneumoniae strain 52977_A1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2075677..2075779 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2075641..2075786 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NB671_RS10000 (NB671_10000) | 2070771..2072831 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NB671_RS10005 (NB671_10005) | 2072835..2073494 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NB671_RS10010 (NB671_10010) | 2073573..2073803 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NB671_RS10015 (NB671_10015) | 2073916..2074290 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NB671_RS10020 (NB671_10020) | 2074294..2075163 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NB671_RS10025 (NB671_10025) | 2075180..2075518 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2075641..2075786 | - | 146 | - | - | Antitoxin |
| - | 2075677..2075779 | + | 103 | - | - | Toxin |
| NB671_RS10030 (NB671_10030) | 2076154..2076297 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NB671_RS10035 (NB671_10035) | 2076402..2077370 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NB671_RS10040 (NB671_10040) | 2077527..2078180 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| NB671_RS10045 (NB671_10045) | 2078177..2078368 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NB671_RS10050 (NB671_10050) | 2078466..2078705 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NB671_RS10055 (NB671_10055) | 2078821..2080254 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T247543 NZ_CP098352:2075677-2075779 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT247543 NZ_CP098352:c2075786-2075641 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
