Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2074616..2074761 | Replicon | chromosome |
| Accession | NZ_CP098350 | ||
| Organism | Klebsiella pneumoniae strain 52980_A4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2074652..2074754 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2074616..2074761 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NB670_RS09985 (NB670_09985) | 2069746..2071806 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NB670_RS09990 (NB670_09990) | 2071810..2072469 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NB670_RS09995 (NB670_09995) | 2072548..2072778 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NB670_RS10000 (NB670_10000) | 2072891..2073265 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NB670_RS10005 (NB670_10005) | 2073269..2074138 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NB670_RS10010 (NB670_10010) | 2074155..2074493 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2074616..2074761 | - | 146 | - | - | Antitoxin |
| - | 2074652..2074754 | + | 103 | - | - | Toxin |
| NB670_RS10015 (NB670_10015) | 2075129..2075272 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NB670_RS10020 (NB670_10020) | 2075377..2076345 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NB670_RS10025 (NB670_10025) | 2076502..2077155 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| NB670_RS10030 (NB670_10030) | 2077152..2077343 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NB670_RS10035 (NB670_10035) | 2077441..2077680 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NB670_RS10040 (NB670_10040) | 2077796..2079229 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T247527 NZ_CP098350:2074652-2074754 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT247527 NZ_CP098350:c2074761-2074616 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
