Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2055200..2055345 | Replicon | chromosome |
| Accession | NZ_CP098343 | ||
| Organism | Klebsiella pneumoniae strain 53009_G1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2055236..2055338 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2055200..2055345 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NB668_RS09825 (NB668_09825) | 2050330..2052390 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| NB668_RS09830 (NB668_09830) | 2052394..2053053 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NB668_RS09835 (NB668_09835) | 2053132..2053362 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NB668_RS09840 (NB668_09840) | 2053475..2053849 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NB668_RS09845 (NB668_09845) | 2053853..2054722 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NB668_RS09850 (NB668_09850) | 2054739..2055077 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2055200..2055345 | - | 146 | - | - | Antitoxin |
| - | 2055236..2055338 | + | 103 | - | - | Toxin |
| NB668_RS09855 (NB668_09855) | 2055713..2055856 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NB668_RS09860 (NB668_09860) | 2055961..2056929 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NB668_RS09865 (NB668_09865) | 2057086..2057739 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| NB668_RS09870 (NB668_09870) | 2057736..2057927 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NB668_RS09875 (NB668_09875) | 2058025..2058264 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NB668_RS09880 (NB668_09880) | 2058380..2059813 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T247485 NZ_CP098343:2055236-2055338 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT247485 NZ_CP098343:c2055345-2055200 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
