Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2055123..2055268 | Replicon | chromosome |
| Accession | NZ_CP098340 | ||
| Organism | Klebsiella pneumoniae strain 53015_G7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2055159..2055261 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2055123..2055268 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NB667_RS09825 (NB667_09825) | 2050253..2052313 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| NB667_RS09830 (NB667_09830) | 2052317..2052976 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NB667_RS09835 (NB667_09835) | 2053055..2053285 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NB667_RS09840 (NB667_09840) | 2053398..2053772 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NB667_RS09845 (NB667_09845) | 2053776..2054645 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NB667_RS09850 (NB667_09850) | 2054662..2055000 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2055123..2055268 | - | 146 | - | - | Antitoxin |
| - | 2055159..2055261 | + | 103 | - | - | Toxin |
| NB667_RS09855 (NB667_09855) | 2055636..2055779 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NB667_RS09860 (NB667_09860) | 2055884..2056852 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NB667_RS09865 (NB667_09865) | 2057009..2057662 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| NB667_RS09870 (NB667_09870) | 2057659..2057850 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NB667_RS09875 (NB667_09875) | 2057948..2058187 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NB667_RS09880 (NB667_09880) | 2058303..2059736 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T247470 NZ_CP098340:2055159-2055261 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT247470 NZ_CP098340:c2055268-2055123 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
