Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2114938..2115083 | Replicon | chromosome |
| Accession | NZ_CP098338 | ||
| Organism | Klebsiella pneumoniae strain 53022_J1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2114974..2115076 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2114938..2115083 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NB666_RS10250 (NB666_10250) | 2110068..2112128 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NB666_RS10255 (NB666_10255) | 2112132..2112791 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NB666_RS10260 (NB666_10260) | 2112870..2113100 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NB666_RS10265 (NB666_10265) | 2113213..2113587 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NB666_RS10270 (NB666_10270) | 2113591..2114460 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NB666_RS10275 (NB666_10275) | 2114477..2114815 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2114938..2115083 | - | 146 | - | - | Antitoxin |
| - | 2114974..2115076 | + | 103 | - | - | Toxin |
| NB666_RS10280 (NB666_10280) | 2115451..2115594 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NB666_RS10285 (NB666_10285) | 2115699..2116667 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NB666_RS10290 (NB666_10290) | 2116824..2117477 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| NB666_RS10295 (NB666_10295) | 2117474..2117665 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NB666_RS10300 (NB666_10300) | 2117763..2118002 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NB666_RS10305 (NB666_10305) | 2118118..2119551 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T247454 NZ_CP098338:2114974-2115076 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT247454 NZ_CP098338:c2115083-2114938 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
