Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2103666..2103811 | Replicon | chromosome |
| Accession | NZ_CP098335 | ||
| Organism | Klebsiella pneumoniae strain 53023_J2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2103702..2103804 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2103666..2103811 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NB665_RS10205 (NB665_10205) | 2098796..2100856 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NB665_RS10210 (NB665_10210) | 2100860..2101519 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NB665_RS10215 (NB665_10215) | 2101598..2101828 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NB665_RS10220 (NB665_10220) | 2101941..2102315 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NB665_RS10225 (NB665_10225) | 2102319..2103188 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NB665_RS10230 (NB665_10230) | 2103205..2103543 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2103666..2103811 | - | 146 | - | - | Antitoxin |
| - | 2103702..2103804 | + | 103 | - | - | Toxin |
| NB665_RS10235 (NB665_10235) | 2104179..2104322 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NB665_RS10240 (NB665_10240) | 2104427..2105395 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NB665_RS10245 (NB665_10245) | 2105552..2106205 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| NB665_RS10250 (NB665_10250) | 2106202..2106393 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NB665_RS10255 (NB665_10255) | 2106491..2106730 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NB665_RS10260 (NB665_10260) | 2106846..2108279 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T247438 NZ_CP098335:2103702-2103804 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT247438 NZ_CP098335:c2103811-2103666 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
