Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2141604..2141747 | Replicon | chromosome |
| Accession | NZ_CP098330 | ||
| Organism | Citrobacter freundii strain 59174 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2141639..2141742 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2141604..2141747 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NB664_RS10365 | 2138051..2138713 | - | 663 | WP_003034918.1 | exodeoxyribonuclease X | - |
| NB664_RS10370 | 2138737..2139393 | - | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| NB664_RS10375 | 2139500..2139730 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| NB664_RS10380 | 2139874..2140248 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| NB664_RS10385 | 2140252..2141124 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| NB664_RS10390 | 2141145..2141483 | + | 339 | WP_044700293.1 | YebY family protein | - |
| - | 2141604..2141747 | - | 144 | - | - | Antitoxin |
| - | 2141639..2141742 | + | 104 | - | - | Toxin |
| NB664_RS10395 | 2141896..2142537 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| NB664_RS10400 | 2142538..2142729 | - | 192 | WP_003034941.1 | YebW family protein | - |
| NB664_RS10405 | 2142832..2143068 | - | 237 | WP_029139506.1 | YebV family protein | - |
| NB664_RS10410 | 2143169..2144557 | - | 1389 | WP_044700319.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2069652..2149964 | 80312 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T247423 NZ_CP098330:2141639-2141742 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT247423 NZ_CP098330:c2141747-2141604 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
