Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2849257..2849422 | Replicon | chromosome |
| Accession | NZ_CP098325 | ||
| Organism | Leclercia adecarboxylata strain kcgeb_e1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2849284..2849386 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2849257..2849422 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NB069_RS13560 (NB069_13560) | 2845277..2846719 | + | 1443 | WP_250584331.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NB069_RS13565 (NB069_13565) | 2846823..2847062 | + | 240 | WP_250584333.1 | YebV family protein | - |
| NB069_RS13570 (NB069_13570) | 2847167..2847358 | + | 192 | WP_039030805.1 | YebW family protein | - |
| NB069_RS13575 (NB069_13575) | 2847359..2848003 | - | 645 | WP_250584335.1 | protein-serine/threonine phosphatase | - |
| NB069_RS13580 (NB069_13580) | 2848180..2849127 | + | 948 | WP_250584337.1 | VirK/YbjX family protein | - |
| - | 2849257..2849422 | + | 166 | - | - | Antitoxin |
| - | 2849284..2849386 | - | 103 | - | - | Toxin |
| NB069_RS13585 (NB069_13585) | 2849527..2849865 | - | 339 | WP_250584339.1 | YebY family protein | - |
| NB069_RS13590 (NB069_13590) | 2849880..2850752 | - | 873 | WP_250584341.1 | copper homeostasis membrane protein CopD | - |
| NB069_RS13595 (NB069_13595) | 2850754..2851128 | - | 375 | WP_250584343.1 | CopC domain-containing protein YobA | - |
| NB069_RS13600 (NB069_13600) | 2851264..2851494 | + | 231 | WP_250584345.1 | DNA polymerase III subunit theta | - |
| NB069_RS13605 (NB069_13605) | 2851602..2852258 | + | 657 | WP_250584347.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NB069_RS13610 (NB069_13610) | 2852283..2852945 | + | 663 | WP_039030812.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T247413 NZ_CP098325:c2849386-2849284 [Leclercia adecarboxylata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 166 bp
>AT247413 NZ_CP098325:2849257-2849422 [Leclercia adecarboxylata]
AGGAAAATGCGTTAACTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGG
AGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTT
TCCAGT
AGGAAAATGCGTTAACTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGG
AGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTT
TCCAGT
