Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 1038845..1039335 Replicon chromosome
Accession NZ_CP098247
Organism Oxalobacter aliiformigenes strain BA2

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NB636_RS05020 Protein ID WP_269281745.1
Coordinates 1038845..1039054 (-) Length 70 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NB636_RS05025 Protein ID WP_269281743.1
Coordinates 1039051..1039335 (-) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NB636_RS05000 (NB636_04985) 1035208..1035756 - 549 WP_269281751.1 tetratricopeptide repeat protein -
NB636_RS05005 (NB636_04990) 1036161..1036400 - 240 WP_269281750.1 hypothetical protein -
NB636_RS05010 (NB636_04995) 1036478..1037626 + 1149 WP_269281748.1 FRG domain-containing protein -
NB636_RS05015 (NB636_05000) 1037771..1038430 - 660 WP_269281746.1 MarR family transcriptional regulator -
NB636_RS05020 (NB636_05005) 1038845..1039054 - 210 WP_269281745.1 type II toxin-antitoxin system YafQ family toxin Toxin
NB636_RS05025 (NB636_05010) 1039051..1039335 - 285 WP_269281743.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
NB636_RS05030 (NB636_05015) 1040079..1040738 + 660 WP_269281741.1 YadA C-terminal domain-containing protein -
NB636_RS05035 (NB636_05020) 1041031..1041693 - 663 WP_269281739.1 tetratricopeptide repeat protein -
NB636_RS05040 (NB636_05025) 1042055..1043179 + 1125 WP_269281737.1 DUF2806 domain-containing protein -
NB636_RS05045 (NB636_05030) 1043221..1043928 - 708 WP_269281735.1 phenylalanine--tRNA ligase beta subunit-related protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(4-69)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(7-86)


Sequences

Toxin        


Download         Length: 70 a.a.        Molecular weight: 8171.48 Da        Isoelectric Point: 7.2141

>T247355 WP_269281745.1 NZ_CP098247:c1039054-1038845 [Oxalobacter aliiformigenes]
MNKLALVPANQFKRDARKQFQMLLTAERAEVLHCLINDKELPEKYCDHSLTGDFRDYRECHIRPDLLLV

Download         Length: 210 bp

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10911.34 Da        Isoelectric Point: 7.2016

>AT247355 WP_269281743.1 NZ_CP098247:c1039335-1039051 [Oxalobacter aliiformigenes]
MSSVNFNVRMDKTLKERAFPIIESYGLTPAQAIRLFLNQIADTRTIPLSFTHHANGEYNEATRRSLIEARKEFADAKRYN
SIEEMLQDIYGKQE

Download         Length: 285 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References