Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 304652..305205 Replicon chromosome
Accession NZ_CP098244
Organism Oxalobacter formigenes strain OxWR1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NB639_RS01405 Protein ID WP_269307569.1
Coordinates 304652..304924 (-) Length 91 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NB639_RS01410 Protein ID WP_269307570.1
Coordinates 304924..305205 (-) Length 94 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NB639_RS01395 (NB639_01395) 303598..303954 + 357 WP_269307567.1 translesion error-prone DNA polymerase V autoproteolytic subunit -
NB639_RS01400 (NB639_01400) 304140..304517 + 378 WP_269307568.1 hypothetical protein -
NB639_RS01405 (NB639_01405) 304652..304924 - 273 WP_269307569.1 type II toxin-antitoxin system YafQ family toxin Toxin
NB639_RS01410 (NB639_01410) 304924..305205 - 282 WP_269307570.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
NB639_RS01415 (NB639_01415) 305611..305814 + 204 WP_036602565.1 cold-shock protein -
NB639_RS01420 (NB639_01420) 305872..306057 + 186 WP_036602567.1 hypothetical protein -
NB639_RS01425 (NB639_01425) 306388..306705 + 318 WP_269307571.1 transcriptional regulator -
NB639_RS01430 (NB639_01430) 306698..306982 + 285 WP_269307572.1 type II toxin-antitoxin system MqsA family antitoxin -
NB639_RS01435 (NB639_01435) 307243..307479 - 237 WP_269307573.1 hypothetical protein -
NB639_RS01440 (NB639_01440) 308221..309051 - 831 WP_269307574.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 265389..306705 41316


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(4-90)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(6-86)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10439.17 Da        Isoelectric Point: 7.2761

>T247344 WP_269307569.1 NZ_CP098244:c304924-304652 [Oxalobacter formigenes]
MLALKTTGQFRKDLKLAKKRGYKLELLEEVLEILQNEEALPAKFKDHPLIGQYAGFRECHIQPDWLLIYIVDNNQLVLTT
VRTGTHSDLF

Download         Length: 273 bp

Antitoxin


Download         Length: 94 a.a.        Molecular weight: 10449.88 Da        Isoelectric Point: 5.8578

>AT247344 WP_269307570.1 NZ_CP098244:c305205-304924 [Oxalobacter formigenes]
MAKDANINIRIEKEVKSNAEALFASFGITVSDAIKIFLHQSLMTGGLPFEVRQPRYNRETELAMDEARQIIAGKKKSKNY
QSASDMINDLDSE

Download         Length: 282 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References