Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2148440..2148711 | Replicon | chromosome |
| Accession | NZ_CP098234 | ||
| Organism | Escherichia coli strain ZYB39 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2148570..2148673 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2148440..2148711 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFZ69_RS10340 | 2144995..2145657 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFZ69_RS10345 | 2145681..2146337 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFZ69_RS10350 | 2146439..2146669 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFZ69_RS10355 | 2146808..2147182 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KFZ69_RS10360 | 2147186..2148058 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| KFZ69_RS10365 | 2148071..2148412 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2148440..2148711 | - | 272 | - | - | Antitoxin |
| - | 2148570..2148673 | + | 104 | - | - | Toxin |
| KFZ69_RS10370 | 2148808..2149464 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KFZ69_RS10375 | 2149465..2149656 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KFZ69_RS10380 | 2149761..2149997 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFZ69_RS10385 | 2150115..2151554 | - | 1440 | WP_001367453.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T247326 NZ_CP098234:2148570-2148673 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT247326 NZ_CP098234:c2148711-2148440 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
