Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/-
Location 334818..335404 Replicon chromosome
Accession NZ_CP098234
Organism Escherichia coli strain ZYB39

Toxin (Protein)


Gene name hicA Uniprot ID A0A0H0RQZ4
Locus tag KFZ69_RS01505 Protein ID WP_042014162.1
Coordinates 334818..335048 (+) Length 77 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID U9Y7E1
Locus tag KFZ69_RS01510 Protein ID WP_000593555.1
Coordinates 335045..335404 (+) Length 120 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KFZ69_RS01495 (330855) 330855..333590 + 2736 WP_000149158.1 ribosome-associated ATPase/putative transporter RbbA -
KFZ69_RS01500 (333590) 333590..334714 + 1125 WP_001314210.1 ABC transporter permease -
KFZ69_RS01505 (334818) 334818..335048 + 231 WP_042014162.1 type II toxin-antitoxin system HicA family toxin Toxin
KFZ69_RS01510 (335045) 335045..335404 + 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin Antitoxin
KFZ69_RS01515 (335524) 335524..335925 - 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
KFZ69_RS01520 (335931) 335931..336737 - 807 WP_000173666.1 nickel import ATP-binding protein NikE -
KFZ69_RS01525 (336734) 336734..337498 - 765 WP_001136236.1 nickel import ATP-binding protein NikD -
KFZ69_RS01530 (337498) 337498..338331 - 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
KFZ69_RS01535 (338328) 338328..339272 - 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(15-65)

Antitoxin

Uncharacterised protein family HicB

(60-112)


Sequences

Toxin        


Download         Length: 77 a.a.        Molecular weight: 8419.79 Da        Isoelectric Point: 8.5518

>T247319 WP_042014162.1 NZ_CP098234:334818-335048 [Escherichia coli]
MDQLFKSPLPQGIKWTDIESLVKALGGEIKEGRGSRCKFILNMSVACFHRPHPSPDTDKGAVESVRDWLLSIGVKP

Download         Length: 231 bp

Antitoxin


Download         Length: 120 a.a.        Molecular weight: 13402.27 Da        Isoelectric Point: 5.1987

>AT247319 WP_000593555.1 NZ_CP098234:335045-335404 [Escherichia coli]
MIKLKTPNSMEIAGQPAVITYVPELNAFRGKFLGLSGYCDFVSDSIQGLQKEGELSLREYLEDCKAAGIEPYARTEKIKT
FTLRYPESLSERLNNAAAQQQVSVNTYIIETLNERLNHL

Download         Length: 360 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H0RQZ4

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LKZ6

References