Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | V | Classification (family/domain) | ghoTS/ghoT-GhoS |
Location | 4356531..4357028 | Replicon | chromosome |
Accession | NZ_CP098227 | ||
Organism | Escherichia coli strain XJ6-3 |
Toxin (Protein)
Gene name | ghoT | Uniprot ID | L4JJG6 |
Locus tag | KFZ54_RS21065 | Protein ID | WP_001173343.1 |
Coordinates | 4356531..4356704 (-) | Length | 58 a.a. |
Antitoxin (Protein)
Gene name | ghoS | Uniprot ID | L4JK92 |
Locus tag | KFZ54_RS21070 | Protein ID | WP_000398619.1 |
Coordinates | 4356732..4357028 (-) | Length | 99 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
KFZ54_RS21055 (4353201) | 4353201..4354658 | + | 1458 | WP_088375761.1 | dipeptide/tripeptide permease DtpC | - |
KFZ54_RS21060 (4354895) | 4354895..4356412 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
KFZ54_RS21065 (4356531) | 4356531..4356704 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin |
KFZ54_RS21070 (4356732) | 4356732..4357028 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin |
KFZ54_RS21075 (4357255) | 4357255..4357527 | - | 273 | WP_000405647.1 | GNAT family N-acetyltransferase | - |
KFZ54_RS21080 (4357539) | 4357539..4357769 | - | 231 | WP_000371704.1 | 4Fe-4S mono-cluster protein YjdI | - |
KFZ54_RS21085 (4357950) | 4357950..4359581 | + | 1632 | WP_088375762.1 | sensor histidine kinase | - |
KFZ54_RS21090 (4359578) | 4359578..4360297 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A7U9QI41 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A7U9QBH6 |