Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2029234..2029505 | Replicon | chromosome |
| Accession | NZ_CP098227 | ||
| Organism | Escherichia coli strain XJ6-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2029364..2029467 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2029234..2029505 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFZ54_RS09720 | 2025789..2026451 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KFZ54_RS09725 | 2026475..2027131 | - | 657 | WP_088376165.1 | carbon-nitrogen hydrolase family protein YobB | - |
| KFZ54_RS09730 | 2027233..2027463 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KFZ54_RS09735 | 2027602..2027976 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| KFZ54_RS09740 | 2027980..2028852 | + | 873 | WP_097756045.1 | copper homeostasis membrane protein CopD | - |
| KFZ54_RS09745 | 2028865..2029206 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2029234..2029505 | - | 272 | - | - | Antitoxin |
| - | 2029364..2029467 | + | 104 | - | - | Toxin |
| KFZ54_RS09750 | 2029602..2030258 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| KFZ54_RS09755 | 2030259..2030450 | - | 192 | WP_001313035.1 | YebW family protein | - |
| KFZ54_RS09760 | 2030555..2030791 | - | 237 | WP_001295499.1 | YebV family protein | - |
| KFZ54_RS09765 | 2030909..2032348 | - | 1440 | WP_088376320.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T247250 NZ_CP098227:2029364-2029467 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT247250 NZ_CP098227:c2029505-2029234 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
