Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) mazEF/PRK09907-MazE
Location 3729376..3729959 Replicon chromosome
Accession NZ_CP098223
Organism Escherichia coli strain Z0117EC0005

Toxin (Protein)


Gene name mazF Uniprot ID V0SV58
Locus tag NBY12_RS17840 Protein ID WP_000254750.1
Coordinates 3729376..3729711 (-) Length 112 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID S1P3W5
Locus tag NBY12_RS17845 Protein ID WP_000581937.1
Coordinates 3729711..3729959 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NBY12_RS17825 (3725264) 3725264..3726562 - 1299 WP_000036723.1 phosphopyruvate hydratase -
NBY12_RS17830 (3726649) 3726649..3728286 - 1638 WP_000210878.1 CTP synthase (glutamine hydrolyzing) -
NBY12_RS17835 (3728514) 3728514..3729305 - 792 WP_032303686.1 nucleoside triphosphate pyrophosphohydrolase -
NBY12_RS17840 (3729376) 3729376..3729711 - 336 WP_000254750.1 endoribonuclease MazF Toxin
NBY12_RS17845 (3729711) 3729711..3729959 - 249 WP_000581937.1 type II toxin-antitoxin system antitoxin MazE Antitoxin
NBY12_RS17850 (3730037) 3730037..3732271 - 2235 WP_000226815.1 GTP pyrophosphokinase -
NBY12_RS17855 (3732319) 3732319..3733620 - 1302 WP_032303687.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(10-109)

Antitoxin

SpoVT-AbrB domain

(7-51)


Sequences

Toxin        


Download         Length: 112 a.a.        Molecular weight: 12067.95 Da        Isoelectric Point: 8.2618

>T247233 WP_000254750.1 NZ_CP098223:c3729711-3729376 [Escherichia coli]
MVSRYVPDTGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKS
IAWRARGATKKGTVAPEELQLIKAKINVLIG

Download         Length: 336 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9355.74 Da        Isoelectric Point: 4.4665

>AT247233 WP_000581937.1 NZ_CP098223:c3729959-3729711 [Escherichia coli]
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKE
VW

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB V0SV58

Antitoxin

Source ID Structure
PDB 1UB4
PDB 5CQX
PDB 5CQY
PDB 1MVF
PDB 2MRN
PDB 2MRU
AlphaFold DB A0A7U9LMB4

References