Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2739867..2740135 | Replicon | chromosome |
| Accession | NZ_CP098223 | ||
| Organism | Escherichia coli strain Z0117EC0005 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2739905..2740008 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2739867..2740135 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY12_RS13100 | 2737024..2738463 | + | 1440 | WP_032303224.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NBY12_RS13105 | 2738581..2738817 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NBY12_RS13110 | 2738922..2739113 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NBY12_RS13115 | 2739114..2739770 | - | 657 | WP_032303212.1 | protein-serine/threonine phosphatase | - |
| - | 2739867..2740135 | + | 269 | - | - | Antitoxin |
| - | 2739905..2740008 | - | 104 | - | - | Toxin |
| NBY12_RS13120 | 2740165..2740506 | - | 342 | WP_000976467.1 | YebY family protein | - |
| NBY12_RS13125 | 2740519..2741391 | - | 873 | WP_000879324.1 | copper homeostasis membrane protein CopD | - |
| NBY12_RS13130 | 2741395..2741769 | - | 375 | WP_000204701.1 | CopC domain-containing protein YobA | - |
| NBY12_RS13135 | 2741908..2742138 | + | 231 | WP_032303213.1 | DNA polymerase III subunit theta | - |
| NBY12_RS13140 | 2742240..2742896 | + | 657 | WP_032303214.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NBY12_RS13145 | 2742920..2743582 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T247229 NZ_CP098223:c2740008-2739905 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT247229 NZ_CP098223:2739867-2740135 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
