Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2711549..2711817 | Replicon | chromosome |
| Accession | NZ_CP098219 | ||
| Organism | Escherichia coli strain Z0117EC0013 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2711587..2711689 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2711549..2711817 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY13_RS13205 | 2708707..2710146 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NBY13_RS13210 | 2710263..2710499 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NBY13_RS13215 | 2710604..2710795 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NBY13_RS13220 | 2710796..2711452 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 2711549..2711817 | + | 269 | - | - | Antitoxin |
| - | 2711587..2711689 | - | 103 | - | - | Toxin |
| NBY13_RS13225 | 2711847..2712188 | - | 342 | WP_000976472.1 | YebY family protein | - |
| NBY13_RS13230 | 2712201..2713073 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| NBY13_RS13235 | 2713077..2713451 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NBY13_RS13240 | 2713590..2713820 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NBY13_RS13245 | 2713922..2714578 | + | 657 | WP_115768452.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NBY13_RS13250 | 2714602..2715264 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T247191 NZ_CP098219:c2711689-2711587 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT247191 NZ_CP098219:2711549-2711817 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
