Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type V Classification (family/domain) ghoTS/ghoT-GhoS
Location 530629..531126 Replicon chromosome
Accession NZ_CP098217
Organism Escherichia coli strain Z0117EC0032

Toxin (Protein)


Gene name ghoT Uniprot ID L4JJG6
Locus tag NBY14_RS02410 Protein ID WP_001173343.1
Coordinates 530953..531126 (+) Length 58 a.a.

Antitoxin (Protein)


Gene name ghoS Uniprot ID L4JK92
Locus tag NBY14_RS02405 Protein ID WP_000398619.1
Coordinates 530629..530925 (+) Length 99 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NBY14_RS02385 (527359) 527359..528078 - 720 WP_000611288.1 two-component system response regulator DcuR -
NBY14_RS02390 (528075) 528075..529706 - 1632 WP_001216477.1 sensor histidine kinase -
NBY14_RS02395 (529886) 529886..530116 + 231 WP_001550470.1 4Fe-4S mono-cluster protein YjdI -
NBY14_RS02400 (530128) 530128..530400 + 273 WP_000405647.1 GNAT family N-acetyltransferase -
NBY14_RS02405 (530629) 530629..530925 + 297 WP_000398619.1 type V toxin-antitoxin system endoribonuclease antitoxin GhoS Antitoxin
NBY14_RS02410 (530953) 530953..531126 + 174 WP_001173343.1 type V toxin-antitoxin system toxin GhoT Toxin
NBY14_RS02415 (531245) 531245..532762 - 1518 WP_001550472.1 lysine--tRNA ligase -
NBY14_RS02420 (532999) 532999..534456 - 1458 WP_001550473.1 dipeptide/tripeptide permease DtpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin GhoT/OrtT

(4-57)

Antitoxin

Endoribonuclease antitoxin GhoS

(5-94)


Sequences

Toxin        


Download         Length: 58 a.a.        Molecular weight: 6555.06 Da        Isoelectric Point: 10.2288

>T247153 WP_001173343.1 NZ_CP098217:530953-531126 [Escherichia coli]
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF

Download         Length: 174 bp

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11467.97 Da        Isoelectric Point: 4.1705

>AT247153 WP_000398619.1 NZ_CP098217:530629-530925 [Escherichia coli]
MEGKNKFNTYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDI
DFDLNIMTVDDYFRQFYK

Download         Length: 297 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9QI41

Antitoxin

Source ID Structure
PDB 2LLZ
AlphaFold DB A0A7U9QBH6

References