Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2477254..2477348 Replicon chromosome
Accession NC_014029
Organism Yersinia pestis Z176003

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2477255..2477348 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2477254..2477348 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
YPZ3_RS11505 2472447..2474525 - 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -
YPZ3_RS11510 2474525..2475685 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
YPZ3_RS11515 2476217..2476675 + 459 WP_002211098.1 hypothetical protein -
YPZ3_RS11520 2476669..2476995 + 327 WP_002211097.1 DUF1493 family protein -
- 2477254..2477348 + 95 - - Antitoxin
- 2477255..2477348 - 94 - - Toxin
YPZ3_RS11530 2477518..2477859 - 342 WP_002211095.1 YebY family protein -
YPZ3_RS11535 2477956..2478840 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
YPZ3_RS11540 2478843..2479229 - 387 WP_002211093.1 CopC domain-containing protein YobA -
YPZ3_RS11545 2479626..2480135 - 510 WP_002211092.1 non-heme ferritin -
YPZ3_RS11550 2480536..2480766 + 231 WP_002211091.1 DNA polymerase III subunit theta -
YPZ3_RS11555 2480826..2481776 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T24711 NC_014029:c2477348-2477255 [Yersinia pestis Z176003]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT24711 NC_014029:2477254-2477348 [Yersinia pestis Z176003]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References