Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2042293..2042564 | Replicon | chromosome |
| Accession | NZ_CP098211 | ||
| Organism | Escherichia coli strain Z0117EC0040 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2042423..2042526 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2042293..2042564 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY16_RS09830 | 2038848..2039510 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NBY16_RS09835 | 2039534..2040190 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NBY16_RS09840 | 2040292..2040522 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NBY16_RS09845 | 2040661..2041035 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NBY16_RS09850 | 2041039..2041911 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| NBY16_RS09855 | 2041924..2042265 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2042293..2042564 | - | 272 | - | - | Antitoxin |
| - | 2042423..2042526 | + | 104 | - | - | Toxin |
| NBY16_RS09860 | 2042661..2043317 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| NBY16_RS09865 | 2043318..2043509 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NBY16_RS09870 | 2043614..2043850 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NBY16_RS09875 | 2043968..2045407 | - | 1440 | WP_048963179.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T247102 NZ_CP098211:2042423-2042526 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT247102 NZ_CP098211:c2042564-2042293 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
