Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2215595..2215866 | Replicon | chromosome |
| Accession | NZ_CP098210 | ||
| Organism | Escherichia coli strain Z0117EC0051 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2215725..2215828 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2215595..2215866 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY17_RS10370 | 2212150..2212812 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NBY17_RS10375 | 2212836..2213492 | - | 657 | WP_076797519.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NBY17_RS10380 | 2213594..2213824 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NBY17_RS10385 | 2213963..2214337 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NBY17_RS10390 | 2214341..2215213 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| NBY17_RS10395 | 2215226..2215567 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2215595..2215866 | - | 272 | - | - | Antitoxin |
| - | 2215725..2215828 | + | 104 | - | - | Toxin |
| NBY17_RS10400 | 2215963..2216619 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| NBY17_RS10405 | 2216620..2216811 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NBY17_RS10410 | 2216916..2217152 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NBY17_RS10415 | 2217270..2218709 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T247083 NZ_CP098210:2215725-2215828 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT247083 NZ_CP098210:c2215866-2215595 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
