Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2292106..2292374 | Replicon | chromosome |
| Accession | NZ_CP098206 | ||
| Organism | Escherichia coli strain Z0117EC0054 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2292234..2292336 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2292106..2292374 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY18_RS11010 | 2288660..2289322 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NBY18_RS11015 | 2289345..2290001 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NBY18_RS11020 | 2290103..2290333 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NBY18_RS11025 | 2290472..2290846 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NBY18_RS11030 | 2290850..2291722 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| NBY18_RS11035 | 2291735..2292076 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2292106..2292374 | - | 269 | - | - | Antitoxin |
| - | 2292234..2292336 | + | 103 | - | - | Toxin |
| NBY18_RS11040 | 2292471..2293127 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| NBY18_RS11045 | 2293128..2293319 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NBY18_RS11050 | 2293424..2293660 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NBY18_RS11055 | 2293778..2295217 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T247059 NZ_CP098206:2292234-2292336 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT247059 NZ_CP098206:c2292374-2292106 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
