Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2938355..2938626 | Replicon | chromosome |
| Accession | NZ_CP098201 | ||
| Organism | Escherichia coli strain Z0117EC0056 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2938393..2938496 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2938355..2938626 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY20_RS14245 | 2935512..2936951 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NBY20_RS14250 | 2937069..2937305 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NBY20_RS14255 | 2937410..2937601 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NBY20_RS14260 | 2937602..2938258 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 2938355..2938626 | + | 272 | - | - | Antitoxin |
| - | 2938393..2938496 | - | 104 | - | - | Toxin |
| NBY20_RS14265 | 2938654..2938995 | - | 342 | WP_000976472.1 | YebY family protein | - |
| NBY20_RS14270 | 2939008..2939880 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| NBY20_RS14275 | 2939884..2940258 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NBY20_RS14280 | 2940397..2940627 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NBY20_RS14285 | 2940729..2941385 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NBY20_RS14290 | 2941409..2942071 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2930125..2945936 | 15811 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T247013 NZ_CP098201:c2938496-2938393 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT247013 NZ_CP098201:2938355-2938626 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
