Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2239691..2239962 | Replicon | chromosome |
| Accession | NZ_CP098197 | ||
| Organism | Escherichia coli strain Z0117EC0062 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2239821..2239924 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2239691..2239962 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY21_RS10740 | 2236246..2236908 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NBY21_RS10745 | 2236932..2237588 | - | 657 | WP_076797519.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NBY21_RS10750 | 2237690..2237920 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NBY21_RS10755 | 2238059..2238433 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NBY21_RS10760 | 2238437..2239309 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| NBY21_RS10765 | 2239322..2239663 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2239691..2239962 | - | 272 | - | - | Antitoxin |
| - | 2239821..2239924 | + | 104 | - | - | Toxin |
| NBY21_RS10770 | 2240059..2240715 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| NBY21_RS10775 | 2240716..2240907 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NBY21_RS10780 | 2241012..2241248 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NBY21_RS10785 | 2241366..2242805 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2232381..2255802 | 23421 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T246970 NZ_CP098197:2239821-2239924 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT246970 NZ_CP098197:c2239962-2239691 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
