Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2855077..2855348 | Replicon | chromosome |
| Accession | NZ_CP098195 | ||
| Organism | Escherichia coli strain Z0117EC0098 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2855115..2855218 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2855077..2855348 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY23_RS14160 | 2852234..2853673 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NBY23_RS14165 | 2853791..2854027 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NBY23_RS14170 | 2854132..2854323 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NBY23_RS14175 | 2854324..2854980 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2855077..2855348 | + | 272 | - | - | Antitoxin |
| - | 2855115..2855218 | - | 104 | - | - | Toxin |
| NBY23_RS14180 | 2855376..2855717 | - | 342 | WP_000976472.1 | YebY family protein | - |
| NBY23_RS14185 | 2855730..2856602 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| NBY23_RS14190 | 2856606..2856980 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NBY23_RS14195 | 2857119..2857349 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NBY23_RS14200 | 2857451..2858107 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NBY23_RS14205 | 2858131..2858793 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T246949 NZ_CP098195:c2855218-2855115 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT246949 NZ_CP098195:2855077-2855348 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
