Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2189556..2189827 | Replicon | chromosome |
| Accession | NZ_CP098192 | ||
| Organism | Escherichia coli strain Z0117EC0116 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2189686..2189789 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2189556..2189827 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY24_RS10505 | 2186111..2186773 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NBY24_RS10510 | 2186797..2187453 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NBY24_RS10515 | 2187555..2187785 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NBY24_RS10520 | 2187924..2188298 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NBY24_RS10525 | 2188302..2189174 | + | 873 | WP_000879334.1 | copper homeostasis membrane protein CopD | - |
| NBY24_RS10530 | 2189187..2189528 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2189556..2189827 | - | 272 | - | - | Antitoxin |
| - | 2189686..2189789 | + | 104 | - | - | Toxin |
| NBY24_RS10535 | 2189924..2190580 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| NBY24_RS10540 | 2190581..2190772 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NBY24_RS10545 | 2190877..2191113 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NBY24_RS10550 | 2191231..2192670 | - | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T246916 NZ_CP098192:2189686-2189789 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT246916 NZ_CP098192:c2189827-2189556 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
