Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2915048..2915316 | Replicon | chromosome |
| Accession | NZ_CP098187 | ||
| Organism | Escherichia coli strain Z0117EC0117 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2915086..2915188 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2915048..2915316 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY25_RS14465 | 2912205..2913644 | + | 1440 | WP_001467894.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NBY25_RS14470 | 2913762..2913998 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NBY25_RS14475 | 2914103..2914294 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NBY25_RS14480 | 2914295..2914951 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2915048..2915316 | + | 269 | - | - | Antitoxin |
| - | 2915086..2915188 | - | 103 | - | - | Toxin |
| NBY25_RS14485 | 2915346..2915687 | - | 342 | WP_000977376.1 | YebY family protein | - |
| NBY25_RS14490 | 2915700..2916572 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| NBY25_RS14495 | 2916576..2916950 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NBY25_RS14500 | 2917089..2917319 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NBY25_RS14505 | 2917421..2918077 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NBY25_RS14510 | 2918100..2918762 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T246890 NZ_CP098187:c2915188-2915086 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT246890 NZ_CP098187:2915048-2915316 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
