Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2670947..2671218 | Replicon | chromosome |
| Accession | NZ_CP098183 | ||
| Organism | Escherichia coli strain Z0117EC0133 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2670985..2671088 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2670947..2671218 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY27_RS12955 | 2668104..2669543 | + | 1440 | WP_024235159.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NBY27_RS12960 | 2669661..2669897 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NBY27_RS12965 | 2670002..2670193 | + | 192 | WP_000457842.1 | YebW family protein | - |
| NBY27_RS12970 | 2670194..2670850 | - | 657 | WP_021565248.1 | protein-serine/threonine phosphatase | - |
| - | 2670947..2671218 | + | 272 | - | - | Antitoxin |
| - | 2670985..2671088 | - | 104 | - | - | Toxin |
| NBY27_RS12975 | 2671246..2671587 | - | 342 | WP_000976492.1 | YebY family protein | - |
| NBY27_RS12980 | 2671600..2672472 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| NBY27_RS12985 | 2672476..2672850 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NBY27_RS12990 | 2672989..2673219 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NBY27_RS12995 | 2673321..2673977 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NBY27_RS13000 | 2674001..2674663 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T246867 NZ_CP098183:c2671088-2670985 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT246867 NZ_CP098183:2670947-2671218 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
