Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2804906..2805177 | Replicon | chromosome |
| Accession | NZ_CP098178 | ||
| Organism | Escherichia coli strain Z0117EC0148 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2804944..2805047 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2804906..2805177 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY28_RS13745 | 2802063..2803502 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NBY28_RS13750 | 2803620..2803856 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NBY28_RS13755 | 2803961..2804152 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NBY28_RS13760 | 2804153..2804809 | - | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| - | 2804906..2805177 | + | 272 | - | - | Antitoxin |
| - | 2804944..2805047 | - | 104 | - | - | Toxin |
| NBY28_RS13765 | 2805205..2805546 | - | 342 | WP_000976472.1 | YebY family protein | - |
| NBY28_RS13770 | 2805559..2806431 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| NBY28_RS13775 | 2806435..2806809 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NBY28_RS13780 | 2806948..2807178 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NBY28_RS13785 | 2807280..2807936 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NBY28_RS13790 | 2807960..2808622 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T246830 NZ_CP098178:c2805047-2804944 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT246830 NZ_CP098178:2804906-2805177 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
