Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3301610..3301755 | Replicon | chromosome |
| Accession | NZ_CP098175 | ||
| Organism | Klebsiella pneumoniae strain Z0117KP0001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3301617..3301719 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3301610..3301755 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY29_RS16120 | 3297142..3298575 | + | 1434 | WP_064190786.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NBY29_RS16125 | 3298691..3298930 | + | 240 | WP_002911393.1 | YebV family protein | - |
| NBY29_RS16130 | 3299028..3299219 | + | 192 | WP_002911395.1 | YebW family protein | - |
| NBY29_RS16135 | 3299216..3299869 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NBY29_RS16140 | 3300026..3300994 | + | 969 | WP_074195444.1 | VirK/YbjX family protein | - |
| NBY29_RS16145 | 3301099..3301242 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3301610..3301755 | + | 146 | - | - | Antitoxin |
| - | 3301617..3301719 | - | 103 | - | - | Toxin |
| NBY29_RS16150 | 3301878..3302216 | - | 339 | WP_002911404.1 | YebY family protein | - |
| NBY29_RS16155 | 3302233..3303102 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| NBY29_RS16160 | 3303106..3303480 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NBY29_RS16165 | 3303593..3303823 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NBY29_RS16170 | 3303902..3304561 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NBY29_RS16175 | 3304565..3306625 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T246813 NZ_CP098175:c3301719-3301617 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT246813 NZ_CP098175:3301610-3301755 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
