Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3379999..3380144 | Replicon | chromosome |
| Accession | NZ_CP098145 | ||
| Organism | Klebsiella pneumoniae strain Z0117KP0020 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3380006..3380108 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3379999..3380144 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY48_RS16410 | 3375531..3376964 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NBY48_RS16415 | 3377080..3377319 | + | 240 | WP_002911393.1 | YebV family protein | - |
| NBY48_RS16420 | 3377417..3377608 | + | 192 | WP_002911395.1 | YebW family protein | - |
| NBY48_RS16425 | 3377605..3378258 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| NBY48_RS16430 | 3378415..3379383 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NBY48_RS16435 | 3379488..3379631 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3379999..3380144 | + | 146 | - | - | Antitoxin |
| - | 3380006..3380108 | - | 103 | - | - | Toxin |
| NBY48_RS16440 | 3380267..3380605 | - | 339 | WP_002911404.1 | YebY family protein | - |
| NBY48_RS16445 | 3380622..3381491 | - | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| NBY48_RS16450 | 3381495..3381869 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NBY48_RS16455 | 3381982..3382212 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NBY48_RS16460 | 3382291..3382950 | + | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| NBY48_RS16465 | 3382954..3385014 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T246700 NZ_CP098145:c3380108-3380006 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT246700 NZ_CP098145:3379999-3380144 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
