Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1864038..1864183 | Replicon | chromosome |
| Accession | NZ_CP098141 | ||
| Organism | Klebsiella pneumoniae strain Z0117KP0025 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1864074..1864176 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1864038..1864183 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY50_RS10480 | 1859168..1861228 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NBY50_RS10485 | 1861232..1861891 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NBY50_RS10490 | 1861970..1862200 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NBY50_RS10495 | 1862313..1862687 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NBY50_RS10500 | 1862691..1863560 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| NBY50_RS10505 | 1863577..1863915 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1864038..1864183 | - | 146 | - | - | Antitoxin |
| - | 1864074..1864176 | + | 103 | - | - | Toxin |
| NBY50_RS10510 | 1864551..1864694 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NBY50_RS10515 | 1864799..1865767 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| NBY50_RS10520 | 1865924..1866577 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| NBY50_RS10525 | 1866574..1866765 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NBY50_RS10530 | 1866863..1867102 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NBY50_RS10535 | 1867218..1868651 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T246682 NZ_CP098141:1864074-1864176 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT246682 NZ_CP098141:c1864183-1864038 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
