Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5135799..5135944 | Replicon | chromosome |
| Accession | NZ_CP098136 | ||
| Organism | Klebsiella pneumoniae strain Z0117KP0027 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5135835..5135937 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5135799..5135944 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY52_RS26425 | 5130929..5132989 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NBY52_RS26430 | 5132993..5133652 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NBY52_RS26435 | 5133731..5133961 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NBY52_RS26440 | 5134074..5134448 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NBY52_RS26445 | 5134452..5135321 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| NBY52_RS26450 | 5135338..5135676 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 5135799..5135944 | - | 146 | - | - | Antitoxin |
| - | 5135835..5135937 | + | 103 | - | - | Toxin |
| NBY52_RS26455 | 5136312..5136455 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NBY52_RS26460 | 5136560..5137528 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| NBY52_RS26465 | 5137685..5138338 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| NBY52_RS26470 | 5138335..5138526 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NBY52_RS26475 | 5138624..5138863 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NBY52_RS26480 | 5138979..5140412 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T246670 NZ_CP098136:5135835-5135937 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT246670 NZ_CP098136:c5135944-5135799 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
