Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4069892..4070037 | Replicon | chromosome |
| Accession | NZ_CP098131 | ||
| Organism | Klebsiella pneumoniae strain Z0117KP0028 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4069928..4070030 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4069892..4070037 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY54_RS19600 | 4065022..4067082 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NBY54_RS19605 | 4067086..4067745 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NBY54_RS19610 | 4067824..4068054 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NBY54_RS19615 | 4068167..4068541 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NBY54_RS19620 | 4068545..4069414 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| NBY54_RS19625 | 4069431..4069769 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4069892..4070037 | - | 146 | - | - | Antitoxin |
| - | 4069928..4070030 | + | 103 | - | - | Toxin |
| NBY54_RS19630 | 4070405..4070548 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NBY54_RS19635 | 4070653..4071621 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| NBY54_RS19640 | 4071778..4072431 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| NBY54_RS19645 | 4072428..4072619 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NBY54_RS19650 | 4072717..4072956 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NBY54_RS19655 | 4073072..4074505 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T246648 NZ_CP098131:4069928-4070030 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT246648 NZ_CP098131:c4070037-4069892 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
