Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3317341..3317486 | Replicon | chromosome |
| Accession | NZ_CP098128 | ||
| Organism | Klebsiella pneumoniae strain Z0117KP0033 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3317348..3317450 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3317341..3317486 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY56_RS17580 | 3312873..3314306 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NBY56_RS17585 | 3314422..3314661 | + | 240 | WP_002911393.1 | YebV family protein | - |
| NBY56_RS17590 | 3314759..3314950 | + | 192 | WP_002911395.1 | YebW family protein | - |
| NBY56_RS17595 | 3314947..3315600 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| NBY56_RS17600 | 3315757..3316725 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| NBY56_RS17605 | 3316830..3316973 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3317341..3317486 | + | 146 | - | - | Antitoxin |
| - | 3317348..3317450 | - | 103 | - | - | Toxin |
| NBY56_RS17610 | 3317609..3317947 | - | 339 | WP_002911404.1 | YebY family protein | - |
| NBY56_RS17615 | 3317964..3318833 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| NBY56_RS17620 | 3318837..3319211 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NBY56_RS17625 | 3319324..3319554 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NBY56_RS17630 | 3319633..3320292 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NBY56_RS17635 | 3320296..3322356 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T246628 NZ_CP098128:c3317450-3317348 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT246628 NZ_CP098128:3317341-3317486 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
