Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1961434..1961579 | Replicon | chromosome |
| Accession | NZ_CP098123 | ||
| Organism | Klebsiella pneumoniae strain Z0117KP0042 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1961470..1961572 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1961434..1961579 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY58_RS09555 | 1956564..1958624 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NBY58_RS09560 | 1958628..1959287 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| NBY58_RS09565 | 1959366..1959596 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NBY58_RS09570 | 1959709..1960083 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NBY58_RS09575 | 1960087..1960956 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| NBY58_RS09580 | 1960973..1961311 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1961434..1961579 | - | 146 | - | - | Antitoxin |
| - | 1961470..1961572 | + | 103 | - | - | Toxin |
| NBY58_RS09585 | 1961947..1962090 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NBY58_RS09590 | 1962195..1963163 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| NBY58_RS09595 | 1963320..1963973 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| NBY58_RS09600 | 1963970..1964161 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NBY58_RS09605 | 1964259..1964498 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NBY58_RS09610 | 1964614..1966047 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T246609 NZ_CP098123:1961470-1961572 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT246609 NZ_CP098123:c1961579-1961434 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
