Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2033460..2033600 | Replicon | chromosome |
| Accession | NZ_CP098030 | ||
| Organism | Serratia ureilytica strain HNU47 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2033504..2033600 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2033460..2033600 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NAL25_RS09830 (NAL25_09810) | 2028680..2029105 | + | 426 | WP_033652008.1 | RNA polymerase-binding protein DksA | - |
| NAL25_RS09835 (NAL25_09815) | 2029283..2030236 | + | 954 | WP_046899355.1 | prolyl aminopeptidase | - |
| NAL25_RS09840 (NAL25_09820) | 2030268..2030498 | - | 231 | WP_193549608.1 | DNA polymerase III subunit theta | - |
| NAL25_RS09845 (NAL25_09825) | 2030839..2031357 | + | 519 | WP_033642716.1 | non-heme ferritin | - |
| NAL25_RS09850 (NAL25_09830) | 2031651..2032067 | + | 417 | WP_046899289.1 | CopC domain-containing protein YobA | - |
| NAL25_RS09855 (NAL25_09835) | 2032070..2032951 | + | 882 | WP_193549607.1 | copper homeostasis membrane protein CopD | - |
| NAL25_RS09860 (NAL25_09840) | 2033021..2033362 | + | 342 | WP_016928154.1 | YebY family protein | - |
| - | 2033460..2033600 | - | 141 | - | - | Antitoxin |
| - | 2033504..2033600 | + | 97 | - | - | Toxin |
| NAL25_RS09865 (NAL25_09845) | 2033679..2034624 | - | 946 | Protein_1903 | tyrosine-type recombinase/integrase | - |
| NAL25_RS09870 (NAL25_09850) | 2034687..2035085 | + | 399 | WP_052759986.1 | tail assembly chaperone | - |
| NAL25_RS09875 (NAL25_09855) | 2035111..2035476 | - | 366 | WP_193549606.1 | helix-turn-helix transcriptional regulator | - |
| NAL25_RS09880 (NAL25_09860) | 2035580..2036386 | - | 807 | WP_072056116.1 | helix-turn-helix transcriptional regulator | - |
| NAL25_RS09885 (NAL25_09865) | 2036582..2037046 | - | 465 | WP_072056117.1 | VOC family protein | - |
| NAL25_RS09890 (NAL25_09870) | 2037062..2037862 | - | 801 | WP_072056118.1 | NAD(P)H-dependent oxidoreductase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB | 2026869..2043735 | 16866 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T246575 NZ_CP098030:2033504-2033600 [Serratia ureilytica]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT246575 NZ_CP098030:c2033600-2033460 [Serratia ureilytica]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
