Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ataRT/DUF1778(antitoxin)
Location 1039996..1040790 Replicon chromosome
Accession NZ_CP097983
Organism Pantoea alhagi strain NX-11

Toxin (Protein)


Gene name ataT Uniprot ID -
Locus tag LQ939_RS04800 Protein ID WP_250651942.1
Coordinates 1040272..1040790 (+) Length 173 a.a.

Antitoxin (Protein)


Gene name ataR Uniprot ID -
Locus tag LQ939_RS04795 Protein ID WP_250651941.1
Coordinates 1039996..1040268 (+) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LQ939_RS04780 (LQ939_04770) 1035048..1036247 + 1200 WP_250651938.1 S-methyl-5-thioribose kinase -
LQ939_RS04785 (LQ939_04775) 1036339..1037829 - 1491 WP_250651939.1 sensor domain-containing diguanylate cyclase -
LQ939_RS04790 (LQ939_04780) 1038153..1039628 + 1476 WP_250651940.1 TrkH family potassium uptake protein -
LQ939_RS04795 (LQ939_04785) 1039996..1040268 + 273 WP_250651941.1 DUF1778 domain-containing protein Antitoxin
LQ939_RS04800 (LQ939_04790) 1040272..1040790 + 519 WP_250651942.1 GNAT family N-acetyltransferase Toxin
LQ939_RS04805 (LQ939_04795) 1041124..1043571 - 2448 WP_250651943.1 acyl-CoA dehydrogenase FadE -
LQ939_RS04810 (LQ939_04800) 1043905..1044486 + 582 WP_084971004.1 D-sedoheptulose 7-phosphate isomerase -
LQ939_RS04815 (LQ939_04805) 1044643..1045410 + 768 WP_085067847.1 class II glutamine amidotransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(88-151)

Antitoxin

Vibrio phage ICP1, Orf50

(9-87)


Sequences

Toxin        


Download         Length: 173 a.a.        Molecular weight: 19316.18 Da        Isoelectric Point: 7.9445

>T246533 WP_250651942.1 NZ_CP097983:1040272-1040790 [Pantoea alhagi]
MDTLKVELFTDEAQYKINNFDCGKTTLNKFLLEHLRRQHNGKILRAYVLINHEAEPKVLGYYTLSGGSFERSSLPSKTQQ
KKIPYKNVPCVTLGRLAIDKTLHGQGWGSMLVSHAMSVVYHASLAVGIHGMFVDALDDEAKQFYTSLGFIELAGENGSSL
FYPIQSIEKLFQ

Download         Length: 519 bp

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 10184.70 Da        Isoelectric Point: 8.7697

>AT246533 WP_250651941.1 NZ_CP097983:1039996-1040268 [Pantoea alhagi]
MANTLKKQRIDLRLSPEDKTLIENAASLSNLTISQFMLASASERAAEVIEQHQRIVLNEASWKQVMEAISNPPEPNVKLK
RAAQRLQNME

Download         Length: 273 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References