Detailed information of TA system TA024652

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): /RES-TIGR02293
• Location: 4470403..4471310
• Replicon: chromosome
• Accession: NC_013956
• Organism: Pantoea ananatis LMG 20103

Toxin (Protein)

• Gene name: -
• Uniprot ID: D4GET9
• Locus tag: PANA_RS20470
• Protein ID: WP_013027861.1
• Coordinates: 4470403..4470870 (-)
• Length: 156 a.a.

Antitoxin (Protein)

• Gene name: -
• Uniprot ID: -
• Locus tag: PANA_RS20475
• Protein ID: WP_041457886.1
• Coordinates: 4470867..4471310 (-)
• Length: 148 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
PANA_RS22115	4465790..4466023	-	234	WP_013027857.1	DUF333 domain-containing protein	-
PANA_RS20455	4466111..4466683	+	573	WP_014598338.1	NAD(P)H-dependent oxidoreductase	-
PANA_RS20460	4466745..4467680	-	936	WP_013027859.1	hypothetical protein	-
PANA_RS20465	4468365..4469759	-	1395	WP_014333136.1	flagellar filament capping protein FliD	-
PANA_RS20470	4470403..4470870	-	468	WP_013027861.1	RES family NAD+ phosphorylase	Toxin
PANA_RS20475	4470867..4471310	-	444	WP_041457886.1	DUF2384 domain-containing protein	Antitoxin
PANA_RS20480	4471696..4471920	+	225	WP_013027863.1	KTSC domain-containing protein	-
PANA_RS20485	4472073..4472768	+	696	WP_013027864.1	hypothetical protein	-
PANA_RS20490	4472843..4473532	-	690	WP_014598333.1	HTH-type transcriptional regulator RutR	-
PANA_RS20495	4473931..4475022	+	1092	WP_013027866.1	pyrimidine utilization protein A	-
PANA_RS20500	4475019..4475771	+	753	WP_013027867.1	pyrimidine utilization protein B	-
PANA_RS20505	4475797..4476183	+	387	WP_013027868.1	pyrimidine utilization protein C	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• RES domain (2-145)

Antitoxin

• Antitoxin Xre (16-147)

Sequences

Toxin

Protein

• Length: 156 a.a.
• Molecular weight: 17207.70 Da
• Isoelectric Point: 5.1570

>T24652 WP_013027861.1 NC_013956:c4470870-4470403 [Pantoea ananatis LMG 20103]
MKLYRMTKTRYLGSAWSGFGAREGGGRWNSVGVSMVYASETASLTMLETLIHLQSASVLDFFTLMSIDVPDRLIEWIDIK
QLPDDWAAPEAPAALRLFGDAWIQSGGSVALRVPSALSPVESNYLLNPEHPEFSAIVRQAVNIPFLFDARFSRQV

Nucleotide

• Length: 468 bp

>T24652 NC_013956:c4470870-4470403 [Pantoea ananatis LMG 20103]
TTGAAGCTCTATCGCATGACCAAAACGCGCTATCTGGGGTCGGCCTGGAGCGGTTTTGGTGCCCGTGAAGGCGGCGGACG
CTGGAACAGCGTCGGCGTATCGATGGTCTACGCTTCTGAAACCGCTTCCCTCACCATGCTGGAGACGCTTATCCATCTGC
AAAGCGCCAGCGTGCTGGACTTTTTTACCCTCATGAGCATTGACGTTCCCGACAGGCTGATTGAATGGATTGATATCAAG
CAACTGCCTGACGACTGGGCCGCACCGGAAGCGCCTGCAGCGCTGCGTTTATTTGGTGATGCCTGGATACAAAGCGGGGG
ATCGGTCGCACTGCGCGTGCCCAGTGCCCTTTCGCCCGTGGAATCGAATTATCTTCTCAATCCCGAGCATCCTGAATTCA
GTGCGATCGTCAGACAGGCGGTAAACATCCCCTTCCTTTTTGACGCACGTTTTTCCCGACAGGTATAA

Antitoxin

Protein

• Length: 148 a.a.
• Molecular weight: 16403.74 Da
• Isoelectric Point: 7.0208

>AT24652 WP_041457886.1 NC_013956:c4471310-4470867 [Pantoea ananatis LMG 20103]
MKQFTLPVSAVEPDRLWQFAGLSSADGVMLMDQIDDGLDGTVASRIVTWAQISQAELRRMTGIAGSTFTRGVKSRFTAEQ
SERLVRFIRVMDRAVELFEGDKEKARQWLNEPARALGNKKPADLVASETGAYEVLKLITRLEHGVYS

Nucleotide

• Length: 444 bp

>AT24652 NC_013956:c4471310-4470867 [Pantoea ananatis LMG 20103]
ATGAAACAGTTCACTTTACCCGTATCCGCTGTAGAACCGGATCGTCTATGGCAATTTGCTGGCCTGAGCAGTGCTGACGG
CGTGATGCTGATGGATCAAATCGATGATGGTCTGGACGGCACGGTAGCCAGTCGCATTGTCACTTGGGCGCAAATCTCTC
AGGCAGAACTGCGCCGTATGACCGGCATTGCGGGCTCAACCTTCACCCGCGGCGTTAAAAGCCGCTTTACTGCGGAGCAG
AGCGAACGGCTGGTGCGTTTTATTCGCGTGATGGATCGTGCGGTTGAGCTGTTTGAGGGTGATAAAGAAAAGGCACGGCA
GTGGCTCAATGAGCCTGCGCGCGCCTTAGGCAATAAAAAACCGGCCGATCTGGTTGCGTCAGAAACCGGGGCTTATGAAG
TGCTGAAACTCATTACCCGGCTTGAACACGGTGTGTATTCTTGA