246515

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbDE/ParE-DnaT
Location 868938..869469 Replicon chromosome
Accession NZ_CP097896
Organism Pectobacterium actinidiae strain GX-Pa1

Toxin (Protein)


Gene name stbE Uniprot ID -
Locus tag M9782_RS03905 Protein ID WP_275071690.1
Coordinates 869182..869469 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name stbD Uniprot ID A0A1V2R9J2
Locus tag M9782_RS03900 Protein ID WP_039282788.1
Coordinates 868938..869192 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M9782_RS03875 (M9782_03875) 864043..864633 - 591 WP_005975525.1 DnaA initiator-associating protein DiaA -
M9782_RS03880 (M9782_03880) 864686..865042 - 357 WP_039279491.1 YraN family protein -
M9782_RS03885 (M9782_03885) 865039..867057 - 2019 WP_275071689.1 penicillin-binding protein activator -
M9782_RS03890 (M9782_03890) 867119..868006 + 888 WP_039354667.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
M9782_RS03900 (M9782_03900) 868938..869192 + 255 WP_039282788.1 plasmid stabilization protein Antitoxin
M9782_RS03905 (M9782_03905) 869182..869469 + 288 WP_275071690.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
M9782_RS03910 (M9782_03910) 869646..870434 + 789 WP_275071691.1 4,5-DOPA dioxygenase extradiol -
M9782_RS03915 (M9782_03915) 870565..871962 - 1398 WP_275072370.1 efflux transporter outer membrane subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-82)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11011.96 Da        Isoelectric Point: 10.7694

>T246515 WP_275071690.1 NZ_CP097896:869182-869469 [Pectobacterium actinidiae]
MTYKLKFVPSAMKEWKKLGHPVREQFKKKLVERLENPRVPSAQLHGRKDQYKIKLKSAGYRLVYLIQDETITVMVMGVGK
REGSQVYSDTKGRSA

Download         Length: 288 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9208.38 Da        Isoelectric Point: 3.7947

>AT246515 WP_039282788.1 NZ_CP097896:868938-869192 [Pectobacterium actinidiae]
MAFNILTNTAASITELKRDPMGTVRAAEGETIAILNRNEPAFYCVPPAVFAYLMELAEDAELGRTVDDRMSELADAEEIS
LDDL

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A1V2R9J2

References