246513

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 591286..591821 Replicon chromosome
Accession NZ_CP097896
Organism Pectobacterium actinidiae strain GX-Pa1

Toxin (Protein)


Gene name relE Uniprot ID A0A1V2R154
Locus tag M9782_RS02590 Protein ID WP_039363923.1
Coordinates 591286..591573 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag M9782_RS02595 Protein ID WP_275071591.1
Coordinates 591570..591821 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M9782_RS02575 (M9782_02575) 587922..588650 - 729 WP_275071588.1 DUF1266 domain-containing protein -
M9782_RS02580 (M9782_02580) 588869..589711 + 843 WP_275071589.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
M9782_RS02585 (M9782_02585) 589840..591192 + 1353 WP_275071590.1 glutathione-disulfide reductase -
M9782_RS02590 (M9782_02590) 591286..591573 - 288 WP_039363923.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
M9782_RS02595 (M9782_02595) 591570..591821 - 252 WP_275071591.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
M9782_RS02600 (M9782_02600) 592076..592981 + 906 WP_275071592.1 siderophore-interacting protein -
M9782_RS02605 (M9782_02605) 593016..593771 - 756 WP_275071593.1 thiol:disulfide interchange protein DsbG -
M9782_RS02610 (M9782_02610) 594044..594667 + 624 WP_275071594.1 LysE family translocator -
M9782_RS02615 (M9782_02615) 594727..595767 - 1041 WP_275071595.1 HipA domain-containing protein -
M9782_RS02620 (M9782_02620) 595764..596078 - 315 WP_275071596.1 HipA N-terminal domain-containing protein -
M9782_RS02625 (M9782_02625) 596063..596389 - 327 WP_039363945.1 helix-turn-helix domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11130.22 Da        Isoelectric Point: 10.3856

>T246513 WP_039363923.1 NZ_CP097896:c591573-591286 [Pectobacterium actinidiae]
MSYRVKFREDALKEWLKLDKTIQQQFAKKLKKCCENPHIPSAKLRGMKDCYKITLRASGFRLVYEIIDDILVIAVVAVGK
RERSGVYHLASERMR

Download         Length: 288 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9087.49 Da        Isoelectric Point: 4.1476

>AT246513 WP_275071591.1 NZ_CP097896:c591821-591570 [Pectobacterium actinidiae]
MPNIILSDTSASISELKKNPMATVNAGDGLPVAILNRNQPAFYCIPAALYEKMLDALDDQELVKLIGERKNQPLVDVDLD
SFL

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A1V2R154

Antitoxin

Source ID Structure

References