Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2570111..2570382 | Replicon | chromosome |
| Accession | NZ_CP097884 | ||
| Organism | Escherichia coli str. K-12 substr. MG1655 strain K-12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2570241..2570344 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2570111..2570382 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NAG72_RS12235 | 2566666..2567328 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NAG72_RS12240 | 2567352..2568008 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NAG72_RS12245 | 2568110..2568340 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NAG72_RS12250 | 2568479..2568853 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NAG72_RS12255 | 2568857..2569729 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| NAG72_RS12260 | 2569742..2570083 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2570111..2570382 | - | 272 | - | - | Antitoxin |
| - | 2570241..2570344 | + | 104 | - | - | Toxin |
| NAG72_RS12265 | 2570479..2571135 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| NAG72_RS12270 | 2571136..2571327 | - | 192 | WP_000457842.1 | YebW family protein | - |
| NAG72_RS12275 | 2571432..2571668 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NAG72_RS12280 | 2571786..2573225 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T246496 NZ_CP097884:2570241-2570344 [Escherichia coli str. K-12 substr. MG1655]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT246496 NZ_CP097884:c2570382-2570111 [Escherichia coli str. K-12 substr. MG1655]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
