Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2435077..2435209 | Replicon | chromosome |
| Accession | NC_013956 | ||
| Organism | Pantoea ananatis LMG 20103 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2435077..2435174 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2435077..2435209 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PANA_RS11070 | 2430296..2431918 | - | 1623 | WP_013026056.1 | alpha-glucoside-specific PTS transporter subunit IIBC | - |
| PANA_RS11075 | 2432198..2432902 | + | 705 | WP_013026057.1 | GntR family transcriptional regulator | - |
| PANA_RS11080 | 2433392..2434936 | + | 1545 | WP_014605683.1 | MCP four helix bundle domain-containing protein | - |
| - | 2435077..2435174 | - | 98 | - | - | Toxin |
| - | 2435077..2435209 | + | 133 | - | - | Antitoxin |
| PANA_RS11085 | 2435289..2435636 | - | 348 | WP_013026059.1 | YebY family protein | - |
| PANA_RS11090 | 2435664..2436538 | - | 875 | Protein_2173 | copper homeostasis membrane protein CopD | - |
| PANA_RS11095 | 2436543..2436917 | - | 375 | WP_013026061.1 | copper homeostasis periplasmic binding protein CopC | - |
| PANA_RS11100 | 2437068..2437298 | + | 231 | WP_019105100.1 | DNA polymerase III subunit theta | - |
| PANA_RS11105 | 2437298..2437969 | + | 672 | WP_013026063.1 | exodeoxyribonuclease X | - |
| PANA_RS11110 | 2437953..2440025 | - | 2073 | WP_014605680.1 | prolyl oligopeptidase family serine peptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 98 bp
>T24641 NC_013956:c2435174-2435077 [Pantoea ananatis LMG 20103]
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
GCAAGGCGAAAGCCTCTATTAATGCCAACTTTTAGCGCACGGCTCCTTGAGAGCCATTTCCCTGGACCGAATACAGGAAT
CGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 133 bp
>AT24641 NC_013956:2435077-2435209 [Pantoea ananatis LMG 20103]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTCAAGGAGCCGTGCGCTAAAAGTTGGCATTAA
TAGAGGCTTTCGCCTTGCTTCTAAAGCGTAGGACAACGCGCCAGATTTTCCAG
