Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | /Acetyltransf_4(toxin) |
| Location | 2007512..2009016 | Replicon | chromosome |
| Accession | NZ_CP097857 | ||
| Organism | Pseudomonas sp. B111 | ||
Toxin (Protein)
| Gene name | - | Uniprot ID | Q9HYX1 |
| Locus tag | M6E97_RS09630 | Protein ID | WP_003119682.1 |
| Coordinates | 2008429..2009016 (-) | Length | 196 a.a. |
Antitoxin (Protein)
| Gene name | - | Uniprot ID | A0A9E8LAI1 |
| Locus tag | M6E97_RS09625 | Protein ID | WP_003117606.1 |
| Coordinates | 2007512..2008366 (-) | Length | 285 a.a. |
Genomic Context
Location: 2002931..2003140 (210 bp)
Type: Others
Protein ID: WP_003091604.1
Type: Others
Protein ID: WP_003091604.1
Location: 2009282..2012761 (3480 bp)
Type: Others
Protein ID: WP_033938798.1
Type: Others
Protein ID: WP_033938798.1
Location: 2003201..2005075 (1875 bp)
Type: Others
Protein ID: WP_003117607.1
Type: Others
Protein ID: WP_003117607.1
Location: 2005250..2007415 (2166 bp)
Type: Others
Protein ID: WP_033989266.1
Type: Others
Protein ID: WP_033989266.1
Location: 2007512..2008366 (855 bp)
Type: Antitoxin
Protein ID: WP_003117606.1
Type: Antitoxin
Protein ID: WP_003117606.1
Location: 2008429..2009016 (588 bp)
Type: Toxin
Protein ID: WP_003119682.1
Type: Toxin
Protein ID: WP_003119682.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M6E97_RS09610 (M6E97_09605) | 2002931..2003140 | + | 210 | WP_003091604.1 | cold-shock protein | - |
| M6E97_RS09615 (M6E97_09610) | 2003201..2005075 | - | 1875 | WP_003117607.1 | MFS transporter | - |
| M6E97_RS09620 (M6E97_09615) | 2005250..2007415 | - | 2166 | WP_033989266.1 | TonB-dependent receptor family protein | - |
| M6E97_RS09625 (M6E97_09620) | 2007512..2008366 | - | 855 | WP_003117606.1 | AraC family transcriptional regulator | Antitoxin |
| M6E97_RS09630 (M6E97_09625) | 2008429..2009016 | - | 588 | WP_003119682.1 | GNAT family protein | Toxin |
| M6E97_RS09635 (M6E97_09630) | 2009282..2012761 | + | 3480 | WP_033938798.1 | PAS domain-containing hybrid sensor histidine kinase/response regulator | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 196 a.a. Molecular weight: 21901.23 Da Isoelectric Point: 9.8676
>T246387 WP_003119682.1 NZ_CP097857:c2009016-2008429 [Pseudomonas sp. B111]
MSRRAPMFKPLPITLQRGALRLEPLVEADIPELVSLAEANREALQYMDGPTRPDWYRQSLAEQREGRALPLAVRLGVQLV
GTTRFAEFLPALPACEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAIDKLGAQREGVLRN
HRRLAGGRLDDTFVYSITDHEWPQVKAALEASFTG
MSRRAPMFKPLPITLQRGALRLEPLVEADIPELVSLAEANREALQYMDGPTRPDWYRQSLAEQREGRALPLAVRLGVQLV
GTTRFAEFLPALPACEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAIDKLGAQREGVLRN
HRRLAGGRLDDTFVYSITDHEWPQVKAALEASFTG
Download Length: 588 bp
Antitoxin
Download Length: 285 a.a. Molecular weight: 31863.14 Da Isoelectric Point: 7.5295
>AT246387 WP_003117606.1 NZ_CP097857:c2008366-2007512 [Pseudomonas sp. B111]
VPDETSGEHTHFWRAAELGGVELLHARYVEQRFAPHVHSSFALVIIEQGAQRFRHRGGEHLAPLGSMVLINPDEVHTGSK
AHDAGWLYRGYYPEMEQIDGILDELEIHHGGVPRFADSVIHDQPLARAFVHLHRLLAEHAGSLETQTRWRETVLALFRRH
ARLPEAPKAGQEPLAVARARELLAARLLDPPSLEELAAAVNLSPFHFARVFRRATGMPPHAWLRQRRLEQARALLKSGRA
PLEVALELGFADQSHLGRQFKQAYGVAPGEYRSACARSSLTTYE
VPDETSGEHTHFWRAAELGGVELLHARYVEQRFAPHVHSSFALVIIEQGAQRFRHRGGEHLAPLGSMVLINPDEVHTGSK
AHDAGWLYRGYYPEMEQIDGILDELEIHHGGVPRFADSVIHDQPLARAFVHLHRLLAEHAGSLETQTRWRETVLALFRRH
ARLPEAPKAGQEPLAVARARELLAARLLDPPSLEELAAAVNLSPFHFARVFRRATGMPPHAWLRQRRLEQARALLKSGRA
PLEVALELGFADQSHLGRQFKQAYGVAPGEYRSACARSSLTTYE
Download Length: 855 bp