Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1937255..1937399 | Replicon | chromosome |
| Accession | NZ_CP097808 | ||
| Organism | Klebsiella variicola strain 17YN56 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1937291..1937393 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1937255..1937399 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9O80_RS09405 (M9O80_09405) | 1932385..1934445 | + | 2061 | WP_070612270.1 | oligopeptidase B | - |
| M9O80_RS09410 (M9O80_09410) | 1934449..1935108 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| M9O80_RS09415 (M9O80_09415) | 1935187..1935417 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| M9O80_RS09420 (M9O80_09420) | 1935531..1935905 | + | 375 | WP_012541261.1 | CopC domain-containing protein YobA | - |
| M9O80_RS09425 (M9O80_09425) | 1935909..1936778 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| M9O80_RS09430 (M9O80_09430) | 1936795..1937133 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1937255..1937399 | - | 145 | - | - | Antitoxin |
| - | 1937291..1937393 | + | 103 | - | - | Toxin |
| M9O80_RS09435 (M9O80_09435) | 1937778..1937921 | - | 144 | WP_046621074.1 | Ecr family regulatory small membrane protein | - |
| M9O80_RS09440 (M9O80_09440) | 1938025..1938993 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| M9O80_RS09445 (M9O80_09445) | 1939150..1939803 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| M9O80_RS09450 (M9O80_09450) | 1939800..1939991 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M9O80_RS09455 (M9O80_09455) | 1940089..1940328 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M9O80_RS09460 (M9O80_09460) | 1940444..1941877 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T246266 NZ_CP097808:1937291-1937393 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT246266 NZ_CP097808:c1937399-1937255 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
