246256

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 4344506..4345062 Replicon chromosome
Accession NZ_CP097804
Organism Xanthomonas oryzae pv. oryzae strain FY517

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag M9500_RS20520 Protein ID WP_229001948.1
Coordinates 4344811..4345062 (+) Length 84 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A854CIX2
Locus tag M9500_RS20515 Protein ID WP_011408759.1
Coordinates 4344506..4344784 (+) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M9500_RS20495 (M9500_20495) 4339623..4340180 - 558 WP_011259349.1 DNA-3-methyladenine glycosylase -
M9500_RS20500 (M9500_20500) 4340330..4341295 - 966 WP_109181928.1 IS1595-like element ISXo5 family transposase -
M9500_RS20505 (M9500_20505) 4341876..4343060 + 1185 WP_011408760.1 IS256-like element IS1113 family transposase -
M9500_RS20510 (M9500_20510) 4343966..4344310 + 345 WP_199285675.1 hypothetical protein -
M9500_RS20515 (M9500_20515) 4344506..4344784 + 279 WP_011408759.1 CopG family ribbon-helix-helix protein Antitoxin
M9500_RS20520 (M9500_20520) 4344811..4345062 + 252 WP_229001948.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
M9500_RS20525 (M9500_20525) 4345323..4345520 + 198 WP_004541336.1 hypothetical protein -
M9500_RS20530 (M9500_20530) 4345589..4345843 + 255 WP_223293127.1 hypothetical protein -
M9500_RS20535 (M9500_20535) 4346060..4346179 + 120 Protein_3929 IS3 family transposase -
M9500_RS22940 4346148..4346276 + 129 WP_012444694.1 hypothetical protein -
M9500_RS20545 (M9500_20545) 4346707..4347108 - 402 WP_011259345.1 H-NS family nucleoid-associated regulatory protein -
M9500_RS20550 (M9500_20550) 4347330..4347506 + 177 Protein_3932 DUF3606 domain-containing protein -
M9500_RS20555 (M9500_20555) 4347788..4348125 + 338 Protein_3933 ATP-dependent DNA ligase -
M9500_RS20560 (M9500_20560) 4348201..4349292 - 1092 WP_113195651.1 ribonuclease D -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-81)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 84 a.a.        Molecular weight: 9603.92 Da        Isoelectric Point: 9.9718

>T246256 WP_229001948.1 NZ_CP097804:4344811-4345062 [Xanthomonas oryzae pv. oryzae]
MLRLREFLRPKNPDAARRAGEAIRRGVQALGAHPRMGRLIEDLSEQYREWLIDFGDSGYVARYRFDGDTVTILAVRHQKE
AGY

Download         Length: 252 bp

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10826.11 Da        Isoelectric Point: 4.9736

>AT246256 WP_011408759.1 NZ_CP097804:4344506-4344784 [Xanthomonas oryzae pv. oryzae]
MVTATSIKLDDELKGRVQHLAESRRRTPHWIMREAIEQYVEREEKREALNRDTLKAWDEFQATGLHVTAEEVDKWLASWG
TDDELPPPECHK

Download         Length: 279 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A854CIX2

References