Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1992908..1993179 | Replicon | chromosome |
| Accession | NZ_CP097721 | ||
| Organism | Escherichia coli strain MS1665 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1993038..1993141 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1992908..1993179 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9O79_RS09595 | 1989463..1990125 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M9O79_RS09600 | 1990149..1990805 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M9O79_RS09605 | 1990907..1991137 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M9O79_RS09610 | 1991276..1991650 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| M9O79_RS09615 | 1991654..1992526 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| M9O79_RS09620 | 1992539..1992880 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1992908..1993179 | - | 272 | - | - | Antitoxin |
| - | 1993038..1993141 | + | 104 | - | - | Toxin |
| M9O79_RS09625 | 1993276..1993932 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| M9O79_RS09630 | 1993933..1994124 | - | 192 | WP_000457842.1 | YebW family protein | - |
| M9O79_RS09635 | 1994229..1994465 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M9O79_RS09640 | 1994583..1996022 | - | 1440 | WP_267320632.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T246155 NZ_CP097721:1993038-1993141 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT246155 NZ_CP097721:c1993179-1992908 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
