Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2214856..2215124 | Replicon | chromosome |
| Accession | NZ_CP097719 | ||
| Organism | Escherichia coli strain MS1679 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2214984..2215086 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2214856..2215124 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9O74_RS10710 | 2211409..2212071 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M9O74_RS10715 | 2212095..2212751 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M9O74_RS10720 | 2212853..2213083 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| M9O74_RS10725 | 2213222..2213596 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| M9O74_RS10730 | 2213600..2214472 | + | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| M9O74_RS10735 | 2214485..2214826 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2214856..2215124 | - | 269 | - | - | Antitoxin |
| - | 2214984..2215086 | + | 103 | - | - | Toxin |
| M9O74_RS10740 | 2215221..2215877 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| M9O74_RS10745 | 2215878..2216069 | - | 192 | WP_001317886.1 | YebW family protein | - |
| M9O74_RS10750 | 2216174..2216410 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M9O74_RS10755 | 2216528..2217967 | - | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T246127 NZ_CP097719:2214984-2215086 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT246127 NZ_CP097719:c2215124-2214856 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
