Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ccdAB/CcdA(antitoxin)
Location 112682..113207 Replicon plasmid pMS1718-1
Accession NZ_CP097717
Organism Escherichia coli strain MS1718

Toxin (Protein)


Gene name ccdB Uniprot ID V0SSI5
Locus tag M9O77_RS25020 Protein ID WP_001159868.1
Coordinates 112902..113207 (+) Length 102 a.a.

Antitoxin (Protein)


Gene name ccdA Uniprot ID S1PPD8
Locus tag M9O77_RS25015 Protein ID WP_000813634.1
Coordinates 112682..112900 (+) Length 73 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M9O77_RS24985 (108074) 108074..108490 - 417 WP_001034046.1 type II toxin-antitoxin system VapC family toxin -
M9O77_RS24990 (108487) 108487..108717 - 231 WP_001261278.1 type II toxin-antitoxin system VapB family antitoxin -
M9O77_RS24995 (108982) 108982..109482 + 501 WP_000528932.1 HEPN family nuclease -
M9O77_RS25000 (109495) 109495..110268 + 774 WP_000905949.1 hypothetical protein -
M9O77_RS25005 (110435) 110435..111568 + 1134 WP_000545984.1 DUF3800 domain-containing protein -
M9O77_RS25010 (111602) 111602..112114 - 513 WP_000151784.1 hypothetical protein -
M9O77_RS25015 (112682) 112682..112900 + 219 WP_000813634.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin
M9O77_RS25020 (112902) 112902..113207 + 306 WP_001159868.1 type II toxin-antitoxin system toxin CcdB Toxin
M9O77_RS25025 (113208) 113208..113990 + 783 WP_072644413.1 site-specific integrase -
M9O77_RS25030 (114742) 114742..115497 + 756 WP_000852146.1 replication initiation protein RepE -
M9O77_RS25035 (116085) 116085..117251 + 1167 WP_000772446.1 plasmid-partitioning protein SopA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid qnrS1 / tet(A) / sitABCD vat / iroN / iroE / iroD / iroC / iroB / iucA / iucB / iucC / iucD / iutA 1..170336 170336


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin CcdB

(2-100)

Antitoxin

Post-segregation antitoxin CcdA

(2-72)


Sequences

Toxin        


Download         Length: 102 a.a.        Molecular weight: 11706.51 Da        Isoelectric Point: 6.4674

>T246111 WP_001159868.1 NZ_CP097717:112902-113207 [Escherichia coli]
MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDKVSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEV
ADLSHRENDIKNAINLMFWGI

Download         Length: 306 bp

Antitoxin


Download         Length: 73 a.a.        Molecular weight: 8372.34 Da        Isoelectric Point: 4.7405

>AT246111 WP_000813634.1 NZ_CP097717:112682-112900 [Escherichia coli]
MKQRITVTVDSDSYQLLKAYDVNISGLVSTTMQNEARRLRAERWKAENQEGMAEVARFIEMNGSFADENRDW

Download         Length: 219 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4VUB
PDB 2VUB
PDB 7EPI
PDB 7EPG
PDB 3VUB
PDB 1X75
PDB 1VUB
PDB 7EPJ
PDB 3HPW
PDB 3G7Z

Antitoxin

Source ID Structure
PDB 3TCJ
PDB 2H3A
PDB 2ADN
PDB 2ADL
PDB 3HPW
PDB 2H3C
PDB 3G7Z
AlphaFold DB A0A829CQY2

References